Well, Joannie is hardly the only elite lady skater this happens to. I recall Mao Asada received three +1 GOEs for a clearly two-footed 3toe in the 2008 TEB LP. And let's not forget Yu-Na Kim's couple of +1 GOEs from 2008 Worlds LP for a 1Lutz.
Yes, I think those are terrible examples of judging, too.
Joannie's lutz combo in the SP wasn't just two-footed, it wasn't very well done, period. She should've received minus GOEs across the board, and I've seen that happen to other skaters who make even lesser mistakes.
And as I recall, some did feel Joannie's PCS in the LP wasn't justified. She was better than some others in those areas, but not by that much.