I admit I am nervous about his position in the team next season. It was close between him and the skater who narrowly placed above him...however I think they would rather reserve a spot for Mark (their hero) and Andrei will be monitored along with Gleb and Makar.
Traditionally, RusFed doesn`t deviate from its "six first places at the Nats are automatically on the national team" rule. That's how strange athletes like Erokhov last year and maybe Kovalev next season end up on the national team.
Of course, Mark won't lose his spot on the national team under any circumstances. But by the formal criteria he may qualify for a place in the reserves, but whether it will be so, or whether he will find a loophole, we will know when we see the lists.
Gleb's position seems even more shaky to me, and I assume that it could also be about a place in the reserve, given the unsuccessful RusNat.
It seems very strange to me that a former junior with no international experience (excluding the Santa Claus Cup) would be in the national team, while an Olympic athlete who was in the top six at the national championship would be in the reserves. But after this kind of judging, you can expect anything.
At point I'm confident that Andrei is still motivated and the feedback from his programs was positive.

There were no clear favourites at nationals and it's unlikely there will be international assignments for the winners. So, this season is more of a build-up season.
What scares me is Andrei's prolonged silence on social media, a sign that he's feeling very strongly about what happened. I hope he won't suffer from a prolonged depression and loss of motivation.
In the post-Olympic season on the Nats the favorites for the new quad are chosen, and the results show that Andrei is not among the favorites, he can't ununderstanding it.
With two clean programs, could Andrei have won nationals outright?
This is a very good question! Before recent events I was sure that yes, now I don't believe it anymore. But things can change in an instant. At the end of the day, you have to see those two clean skates and the scores for them first. Either way, it will be a serious bid to regain the lead. Undoubtedly, Andrei is still one of the leaders of the nat team, I hope no one thinks that he will be replaced by Samarin or Kovalev.
He is very loyal to Davydenko, in terms of 'bonuses' I would maybe consider a move to an alternative coach (not rukavitsin) for his future prospects, but I can't see it happening.
I would feel sorry for an original athlete if he left an equally original coach. No one else will prepare such original programs for Andrei. At least, so far I do not see the prerequisites for this.